When I organize the footage, I first name it.
For example, 05_02_CU_Tina walks inside
The 05 is the scene, 02 is what take it is, CU is close-up (what type of shot it is, WS, LS, MS, EST, O/S, etc.), and the last is a small description of whats happening in the clip.
The next step to the organization is labeling the clip (see example picture). I have five colors to symbolize the quality of the clip so that I can better sort through them when I am finding one to form the scene.
Yellow- Good Take
Red- Best Take
Purple- Okay Take
Blue- Bad Take
Green- B-roll
I try to be strict/severe about labeling these shots because (and I am not just saying this at all or else I wouldn't have realized it as a problem in the first place) almost EVERY take is SO GOOD, I just want to label them ALL as good take. I've gotten good at judging from the beginning what category it should go in and not having to go back after I've found a better take. However, obviously I have not learned anything these past few weeks because now that I am on the last two scenes of the script (going through the footage) and looking through Mr. Kilfara's takes, EVERY CLIP IS LABELED RED, and thats not good because Red in my mind means, "this is the one and only clip to use because it can not be beat, don't even both looking at the other clips", usually I have one per scene. It is not helping that every take in the scene is red!! I have no idea what to do. Who knew having such an incredible actor would be a BAD thing? I'm never going to finish this process and be able to move onto my rough cut!!